Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U _ __call__() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.AR1Matrix method) (torch_openreml.covariance.Augment method) (torch_openreml.covariance.BlockDiagonal method) (torch_openreml.covariance.CompoundSymmetricMatrix method) (torch_openreml.covariance.CovariancePropagation method) (torch_openreml.covariance.DiagonalMatrix method) (torch_openreml.covariance.DummyMatrix method) (torch_openreml.covariance.EqualEntryMatrix method) (torch_openreml.covariance.EquicorrelationMatrix method) (torch_openreml.covariance.Gram method) (torch_openreml.covariance.HadamardProduct method) (torch_openreml.covariance.IdentityMatrix method) (torch_openreml.covariance.Inverse method) (torch_openreml.covariance.KroneckerProduct method) (torch_openreml.covariance.LowerTriangularMatrix method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Product method) (torch_openreml.covariance.ScalarMatrix method) (torch_openreml.covariance.SimpleMatrix method) (torch_openreml.covariance.Stack method) (torch_openreml.covariance.Sum method) (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) (torch_openreml.covariance.Transpose method) (torch_openreml.covariance.UnconstrainedMatrix method) A adaptee (torch_openreml.covariance.Adapter property) Adapter (class in torch_openreml.covariance) ai_step() (torch_openreml.MarginalREML method) AR1Matrix (class in torch_openreml.covariance) Augment (class in torch_openreml.covariance) augment() (in module torch_openreml.utils) auto_grad() (torch_openreml.covariance.Matrix method) B BlockDiagonal (class in torch_openreml.covariance) blue() (in module torch_openreml) (torch_openreml.MarginalREML method) blup() (in module torch_openreml) build_operands() (torch_openreml.covariance.Operator method) build_params() (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) C cache (torch_openreml.covariance.Matrix attribute) codomain (torch_openreml.covariance.transform.Transform attribute) (torch_openreml.covariance.transform.TransformExp attribute) (torch_openreml.covariance.transform.TransformExp10 attribute) (torch_openreml.covariance.transform.TransformExp2 attribute) (torch_openreml.covariance.transform.TransformExpPow2 attribute) (torch_openreml.covariance.transform.TransformIdentity attribute) (torch_openreml.covariance.transform.TransformPow attribute) (torch_openreml.covariance.transform.TransformScaleShift attribute) (torch_openreml.covariance.transform.TransformSigmoid attribute) colnames (torch_openreml.covariance.DummyMatrix property) CompoundSymmetricMatrix (class in torch_openreml.covariance) compute_v_dv() (torch_openreml.MarginalREML method) CovariancePropagation (class in torch_openreml.covariance) D DiagonalMatrix (class in torch_openreml.covariance) disable_cache() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) domain (torch_openreml.covariance.transform.Transform attribute) (torch_openreml.covariance.transform.TransformExp attribute) (torch_openreml.covariance.transform.TransformExp10 attribute) (torch_openreml.covariance.transform.TransformExp2 attribute) (torch_openreml.covariance.transform.TransformExpPow2 attribute) (torch_openreml.covariance.transform.TransformIdentity attribute) (torch_openreml.covariance.transform.TransformPow attribute) (torch_openreml.covariance.transform.TransformScaleShift attribute) (torch_openreml.covariance.transform.TransformSigmoid attribute) DummyMatrix (class in torch_openreml.covariance) E enable_cache() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) EqualEntryMatrix (class in torch_openreml.covariance) EquicorrelationMatrix (class in torch_openreml.covariance) F fixed_param_defaults (torch_openreml.covariance.Matrix property) fixed_param_index (torch_openreml.covariance.Matrix property) fixed_param_names (torch_openreml.covariance.Matrix property) fixed_param_trans (torch_openreml.covariance.Matrix property) free_param_defaults (torch_openreml.covariance.Matrix property) free_param_index (torch_openreml.covariance.Matrix property) free_param_names (torch_openreml.covariance.Matrix property) free_param_trans (torch_openreml.covariance.Matrix property) G get_beta() (torch_openreml.MarginalREML method) get_default_dtype_device() (torch_openreml.covariance.Matrix method) get_device() (in module torch_openreml.utils) get_dtype() (in module torch_openreml.utils) get_intermediates() (torch_openreml.covariance.Matrix method) get_theta() (torch_openreml.MarginalREML method) grad() (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) grad_mode (torch_openreml.covariance.Matrix attribute) grad_tree() (torch_openreml.covariance.Operator method) Gram (class in torch_openreml.covariance) gram_type (torch_openreml.covariance.Gram property) H HadamardProduct (class in torch_openreml.covariance) I IdentityMatrix (class in torch_openreml.covariance) interaction() (in module torch_openreml.utils) Inverse (class in torch_openreml.covariance) inverse() (torch_openreml.covariance.AR1Matrix method) (torch_openreml.covariance.BlockDiagonal method) (torch_openreml.covariance.CompoundSymmetricMatrix method) (torch_openreml.covariance.DiagonalMatrix method) (torch_openreml.covariance.EquicorrelationMatrix method) (torch_openreml.covariance.IdentityMatrix method) (torch_openreml.covariance.Inverse method) (torch_openreml.covariance.KroneckerProduct method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Product method) (torch_openreml.covariance.ScalarMatrix method) (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) (torch_openreml.covariance.Transpose method) is_converged() (torch_openreml.MarginalREML method) J jacobian_chunk_size (torch_openreml.covariance.Matrix attribute) jacobian_method (torch_openreml.covariance.Matrix attribute) K KroneckerProduct (class in torch_openreml.covariance) L loglik() (in module torch_openreml) (torch_openreml.MarginalREML method) LowerTriangularMatrix (class in torch_openreml.covariance) M manual_grad() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.AR1Matrix method) (torch_openreml.covariance.Augment method) (torch_openreml.covariance.BlockDiagonal method) (torch_openreml.covariance.CompoundSymmetricMatrix method) (torch_openreml.covariance.CovariancePropagation method) (torch_openreml.covariance.DiagonalMatrix method) (torch_openreml.covariance.EqualEntryMatrix method) (torch_openreml.covariance.EquicorrelationMatrix method) (torch_openreml.covariance.Gram method) (torch_openreml.covariance.HadamardProduct method) (torch_openreml.covariance.Inverse method) (torch_openreml.covariance.KroneckerProduct method) (torch_openreml.covariance.LowerTriangularMatrix method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Product method) (torch_openreml.covariance.ScalarMatrix method) (torch_openreml.covariance.SimpleMatrix method) (torch_openreml.covariance.Stack method) (torch_openreml.covariance.Sum method) (torch_openreml.covariance.Transpose method) (torch_openreml.covariance.UnconstrainedMatrix method) marginal_predict() (in module torch_openreml) marginal_residual() (in module torch_openreml) MarginalREML (class in torch_openreml) Matrix (class in torch_openreml.covariance) N n_distinct() (in module torch_openreml.utils) num_fixed_params (torch_openreml.covariance.Matrix property) num_free_params (torch_openreml.covariance.Matrix property) num_params (torch_openreml.covariance.Matrix property) numeric_to_design_matrix() (in module torch_openreml.utils) O operands (torch_openreml.covariance.Operator property) operands_grad() (torch_openreml.covariance.Operator method) operands_inverse() (torch_openreml.covariance.Operator method) Operator (class in torch_openreml.covariance) optimize() (torch_openreml.MarginalREML method) P param_defaults (torch_openreml.covariance.Matrix property) param_map (torch_openreml.covariance.Adapter property) param_names (torch_openreml.covariance.Matrix property) param_specs (torch_openreml.covariance.Matrix property) (torch_openreml.covariance.Operator property) param_trans (torch_openreml.covariance.Matrix property) predict() (in module torch_openreml) (torch_openreml.MarginalREML method) Product (class in torch_openreml.covariance) R repr_dict (torch_openreml.covariance.Adapter property) (torch_openreml.covariance.DummyMatrix property) (torch_openreml.covariance.Gram property) (torch_openreml.covariance.Matrix property) (torch_openreml.covariance.Operator property) reset_intermediates() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) residual() (in module torch_openreml) (torch_openreml.MarginalREML method) resolve_dim() (torch_openreml.covariance.Matrix method) S ScalarMatrix (class in torch_openreml.covariance) set_intermediates() (torch_openreml.covariance.Matrix method) set_param_specs() (torch_openreml.covariance.Matrix method) shape (torch_openreml.covariance.Matrix property) simple_param_specs() (in module torch_openreml.covariance) SimpleMatrix (class in torch_openreml.covariance) Stack (class in torch_openreml.covariance) Sum (class in torch_openreml.covariance) T torch_openreml.example_data.john_alpha (built-in variable) trans_grad() (torch_openreml.covariance.Matrix method) Transform (class in torch_openreml.covariance.transform) TransformChain (class in torch_openreml.covariance.transform) TransformExp (class in torch_openreml.covariance.transform) TransformExp10 (class in torch_openreml.covariance.transform) TransformExp2 (class in torch_openreml.covariance.transform) TransformExpPow2 (class in torch_openreml.covariance.transform) TransformIdentity (class in torch_openreml.covariance.transform) TransformPow (class in torch_openreml.covariance.transform) TransformScaleShift (class in torch_openreml.covariance.transform) TransformSigmoid (class in torch_openreml.covariance.transform) Transpose (class in torch_openreml.covariance) tree() (torch_openreml.covariance.Operator method) U UnconstrainedMatrix (class in torch_openreml.covariance) update() (torch_openreml.MarginalREML method)