Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U _ __call__() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.AR1Matrix method) (torch_openreml.covariance.BlockDiagonal method) (torch_openreml.covariance.CompoundSymmetricMatrix method) (torch_openreml.covariance.CovariancePropagation method) (torch_openreml.covariance.DiagonalMatrix method) (torch_openreml.covariance.DummyMatrix method) (torch_openreml.covariance.EquicorrelationMatrix method) (torch_openreml.covariance.HadamardProduct method) (torch_openreml.covariance.IdentityMatrix method) (torch_openreml.covariance.KroneckerProduct method) (torch_openreml.covariance.LowerTriangularMatrix method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.OperatorGram method) (torch_openreml.covariance.ScalarMatrix method) (torch_openreml.covariance.Sum method) (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) (torch_openreml.covariance.UnconstrainedMatrix method) A adaptee (torch_openreml.covariance.Adapter property) Adapter (class in torch_openreml.covariance) ai_step() (torch_openreml.REML method) AR1Matrix (class in torch_openreml.covariance) augment() (in module torch_openreml.utils) auto_grad() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) B BlockDiagonal (class in torch_openreml.covariance) blue() (torch_openreml.REML method) blup() (torch_openreml.REML method) build_operands() (torch_openreml.covariance.Operator method) build_params() (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.Operator method) C codomain (torch_openreml.covariance.transform.Transform attribute) (torch_openreml.covariance.transform.TransformExp attribute) (torch_openreml.covariance.transform.TransformExp10 attribute) (torch_openreml.covariance.transform.TransformExp2 attribute) (torch_openreml.covariance.transform.TransformExpPow2 attribute) (torch_openreml.covariance.transform.TransformIdentity attribute) (torch_openreml.covariance.transform.TransformPow attribute) (torch_openreml.covariance.transform.TransformScaleShift attribute) (torch_openreml.covariance.transform.TransformSigmoid attribute) colnames (torch_openreml.covariance.DummyMatrix property) CompoundSymmetricMatrix (class in torch_openreml.covariance) compute_v_dv() (torch_openreml.REML method) CovariancePropagation (class in torch_openreml.covariance) D DiagonalMatrix (class in torch_openreml.covariance) domain (torch_openreml.covariance.transform.Transform attribute) (torch_openreml.covariance.transform.TransformExp attribute) (torch_openreml.covariance.transform.TransformExp10 attribute) (torch_openreml.covariance.transform.TransformExp2 attribute) (torch_openreml.covariance.transform.TransformExpPow2 attribute) (torch_openreml.covariance.transform.TransformIdentity attribute) (torch_openreml.covariance.transform.TransformPow attribute) (torch_openreml.covariance.transform.TransformScaleShift attribute) (torch_openreml.covariance.transform.TransformSigmoid attribute) DummyMatrix (class in torch_openreml.covariance) E EquicorrelationMatrix (class in torch_openreml.covariance) F fixed_param_defaults (torch_openreml.covariance.Matrix property) fixed_param_index (torch_openreml.covariance.Matrix property) fixed_param_names (torch_openreml.covariance.Matrix property) fixed_param_trans (torch_openreml.covariance.Matrix property) free_param_defaults (torch_openreml.covariance.Matrix property) free_param_index (torch_openreml.covariance.Matrix property) free_param_names (torch_openreml.covariance.Matrix property) free_param_trans (torch_openreml.covariance.Matrix property) G get_beta() (torch_openreml.REML method) get_device() (in module torch_openreml.utils) get_dtype() (in module torch_openreml.utils) get_intermediates() (torch_openreml.covariance.Matrix method) get_theta() (torch_openreml.REML method) grad() (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) gram_type (torch_openreml.covariance.OperatorGram property) H HadamardProduct (class in torch_openreml.covariance) I IdentityMatrix (class in torch_openreml.covariance) interaction() (in module torch_openreml.utils) inverse() (torch_openreml.covariance.transform.Transform method) (torch_openreml.covariance.transform.TransformChain method) (torch_openreml.covariance.transform.TransformExp method) (torch_openreml.covariance.transform.TransformExp10 method) (torch_openreml.covariance.transform.TransformExp2 method) (torch_openreml.covariance.transform.TransformExpPow2 method) (torch_openreml.covariance.transform.TransformIdentity method) (torch_openreml.covariance.transform.TransformPow method) (torch_openreml.covariance.transform.TransformScaleShift method) (torch_openreml.covariance.transform.TransformSigmoid method) is_converged() (torch_openreml.REML method) K KroneckerProduct (class in torch_openreml.covariance) L loglik() (torch_openreml.REML method) LowerTriangularMatrix (class in torch_openreml.covariance) M manual_grad() (torch_openreml.covariance.Adapter method) (torch_openreml.covariance.AR1Matrix method) (torch_openreml.covariance.BlockDiagonal method) (torch_openreml.covariance.CompoundSymmetricMatrix method) (torch_openreml.covariance.CovariancePropagation method) (torch_openreml.covariance.DiagonalMatrix method) (torch_openreml.covariance.EquicorrelationMatrix method) (torch_openreml.covariance.HadamardProduct method) (torch_openreml.covariance.KroneckerProduct method) (torch_openreml.covariance.LowerTriangularMatrix method) (torch_openreml.covariance.Matrix method) (torch_openreml.covariance.OperatorGram method) (torch_openreml.covariance.ScalarMatrix method) (torch_openreml.covariance.Sum method) (torch_openreml.covariance.UnconstrainedMatrix method) map_theta_to_dv() (torch_openreml.covariance.Matrix method) map_theta_to_v() (torch_openreml.covariance.Matrix method) marginal_predict() (torch_openreml.REML method) marginal_residual() (torch_openreml.REML method) Matrix (class in torch_openreml.covariance) N num_fixed_params (torch_openreml.covariance.Matrix property) num_free_params (torch_openreml.covariance.Matrix property) num_params (torch_openreml.covariance.Matrix property) numeric_to_design_matrix() (in module torch_openreml.utils) O operands (torch_openreml.covariance.Operator property) operands_grad() (torch_openreml.covariance.Operator method) Operator (class in torch_openreml.covariance) OperatorGram (class in torch_openreml.covariance) optimize() (torch_openreml.REML method) P param_defaults (torch_openreml.covariance.Matrix property) param_map (torch_openreml.covariance.Adapter property) param_names (torch_openreml.covariance.Matrix property) param_specs (torch_openreml.covariance.Adapter property) (torch_openreml.covariance.Matrix property) (torch_openreml.covariance.Operator property) param_trans (torch_openreml.covariance.Matrix property) predict() (torch_openreml.REML method) R REML (class in torch_openreml) repr_dict (torch_openreml.covariance.Adapter property) (torch_openreml.covariance.DummyMatrix property) (torch_openreml.covariance.Matrix property) (torch_openreml.covariance.Operator property) (torch_openreml.covariance.OperatorGram property) reset_intermediates() (torch_openreml.covariance.Matrix method) residual() (torch_openreml.REML method) S ScalarMatrix (class in torch_openreml.covariance) set_intermediates() (torch_openreml.covariance.Matrix method) shape (torch_openreml.covariance.Matrix property) Sum (class in torch_openreml.covariance) T torch_openreml.example_data.john_alpha (built-in variable) trans_grad() (torch_openreml.covariance.Matrix method) Transform (class in torch_openreml.covariance.transform) TransformChain (class in torch_openreml.covariance.transform) TransformExp (class in torch_openreml.covariance.transform) TransformExp10 (class in torch_openreml.covariance.transform) TransformExp2 (class in torch_openreml.covariance.transform) TransformExpPow2 (class in torch_openreml.covariance.transform) TransformIdentity (class in torch_openreml.covariance.transform) TransformPow (class in torch_openreml.covariance.transform) TransformScaleShift (class in torch_openreml.covariance.transform) TransformSigmoid (class in torch_openreml.covariance.transform) U UnconstrainedMatrix (class in torch_openreml.covariance) update() (torch_openreml.REML method)